Population genomics from pool sequencing
WebApr 10, 2024 · In fact, numerous whole-genome sequencing studies have been published since, studying honey bee population structure and diversity 4,5,6,7,8, evolutionary history 9,10, and investigating ... WebJun 18, 2024 · In this study, we performed whole-genome pooled sequencing (Pool-Seq) on three populations of swan geese with wild type and white-colored feathers. By identifying genomic regions that experienced selective sweeps, we aimed to identify genes that have experienced artificial selection and thus might explain the change in feather color in …
Population genomics from pool sequencing
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WebNov 2, 2024 · Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in … WebSep 23, 2014 · Sequencing the entire genome using Pool-seq, rather than pre-defined regions, is an unbiased approach that allows the discovery of functional differences in the absence of a well-defined genomic ...
Webfrom multiple populations of non-model species, which is complex, time-consuming and costly, even if sequencing capacity and costs are optimized by indexing individuals for … WebSep 27, 2016 · Pool-seq can be successfully used as a cost-effective alternative to individual sequencing for population genetics studies. We have shown that the estimation of AF in …
WebJan 21, 2024 · Background: Whole-genome sequencing has become routine for population genetic studies. Sequencing of individuals provides maximal data but is rather expensive and fewer samples can be studied. In contrast, sequencing a pool of samples (pool-seq) can provide sufficient data, while presenting less of an economic challenge. Few studies have …
WebAug 2, 2016 · The performance of PoPoolationTE2 for Pool-Seq data from a single population is similar to other tools dedicated to TE analysis in pooled samples (TEMP …
WebFeb 3, 2024 · The conclusions drawn from this study could be relevant not only for large-scale population genomics studies but also in cases where the Pool-seq strategy is the only option such as in metagenomic studies and studies with polyploids, among others (Clevenger et al., 2015; Inbar et al., 2024; Pespeni et al., 2013; Shockey et al., 2024). trust ford winterstoke road bristolWeb1 day ago · In this study, we investigated the population genomics of Ae. aegypti at a regional scale in Metropolitan Manila, Philippines using double digestion restriction-site … trust format and loveWebSep 14, 2013 · We used pool-seq data representing ~ 60% of the genome and 80 fish per population to assess the level of genomic divergence between ecomorphs and to identify … philips 272s1m conformity certificateWebJan 6, 2011 · Recent statistical analyses suggest that sequencing of pooled samples provides a cost effective approach to determine genome-wide population genetic parameters. Here we introduce PoPoolation, a toolbox specifically designed for the population genetic analysis of sequence data from pooled individuals. PoPoolation … philips 272s1ae/11WebNext generation sequencing of pooled samples is an effective approach for studies of variability and differentiation in populations. In this paper we provide a comprehensive set of estimators of the most common statistics in population genetics based on the frequency spectrum, namely the Watterson estimator , nucleotide pairwise diversity Π, Tajima's D, Fu … trust for medicaid planningWebApr 30, 2014 · Although pooled-population sequencing has become a widely used approach for estimating allele frequencies, ... Ferretti L, Ramos-Onsins SE, Pérez-Enciso M. Population genomics from pool sequencing. Mol Ecol. 2013; 22:5561–5576. [Google Scholar] Futschik A, Schlötterer C. trust ford - wimbledonWebDec 12, 2013 · Next generation pool-sequencing was applied to this metazoan parasite to analyse genomic variations (SNP and CNV) and to scan for selective sweeps. By mapping genome reads of these two strains to the S. mansoni NMRI strain reference genome [27] , [52] , we discovered hundreds of thousands of SNPs and used these data to make the first … philips 2521